
Host Cell Protein Analysis
Host Cell Protein (HCP) Analysis by LC-MS/MS
Accurate, antibody-free detection and quantification of HCPs

Residual host cell proteins (HCPs) are a major risk factor in the production of recombinant biopharmaceuticals. Thus, identification and risk analysis of all residual host cell derived contaminations is crucial for the approval process of biologic or proteinaceous drug compounds.
​
PolyQuant offers a fast, antibody-independent HCP analysis service using high-resolution LC-MS/MS and stable isotope-labelled reference standards. Our workflows provide quantitative insight into individual HCPs, helping you to meet regulatory expectations and to ensure product safety.
​
More information
Host cell proteins (HCPs) pose a potential safety risk for biologic or proteinaceous drug compounds. As therapeutically relevant biomolecules are often produced in a biological expression system, remnants from the host cell can be co-purified during the manufacturing process. These host-cell proteins (HCPs) can, even at low levels, negatively impact the stability and functionality of the product. Therefore, regulatory agencies demand identification and risk analysis of all residual host cell derived contaminations during the drug approval process. Even for approved drugs, HCPs need to be routinely monitored and exactly quantified in every production batch of a drug. To address the regulatory requirements, manufacturers need to optimize the production process to reduce the amount of host cell derived contaminations as much as possible and to establish a surveillance process to monitor the removal of HCPs during production. The most commonly used method to determine the amounts of HCPs in pharmaceutical industry currently is ELISA. However, this method often relies on polyclonal antibodies, providing limited specificity. Furthermore, setting up ELISA for new expression systems is often a bottleneck, as it depends on antibody availability.
Why choose LC-MS/MS for HCP Analysis?
Exact identification and quantification of HCPs already at early stages of the drug development process enables focussed optimization of the purification process. Our mass spectrometry-based technology enables the unbiased detection of HCPs with high sensitivity and precision without the need for antibodies. Combined with our proprietary QconCAT technology, the detected HCPs can be quantitatively determined for each production batch.
Our established LC-MS/MS workflows and bioinformatics analyses provide solutions for application in quality control of recombinant proteins, vaccines, protein purifications etc. in biopharmaceutical production, biosimilar development, process-related impurity profiling, product release and comparability studies.
No antibodies required
Fast setup through antibody-free detection of host cell proteins with high accuracy and sensitivity.
Identify and quantify individual proteins
Detect specific HCPs at every purification step and receive detailed protein-level data.
Applicable to any host system
Ready-made and custom options available for CHO, E. coli, HEK etc.
Scalable
From exploratory studies to routine measurements and high throughput analyses.
GMP-compliant workflows available
Ready for method transfer and use in regulated environments.
HCP Analysis Services
We offer flexible services for every development stage
PurityQuant ID
Untargeted LC-MS/MS analysis to detect and identify all proteinaceous impurities in your sample.
-
HCP identification
-
Primary scanning for possible contaminants via untargeted proteomics
-
Detection of common and custom-specific HCPs​
Includes sample preparation (tryptic digest), 4 LC-MS/MS runs (blank + three increasing concentrations) and data analysis.
Price per sample
€ 1000,-
Please download and complete our guidelines for sample submission (for one sample) or our sample submission sheet (for multiple samples)
PurityQuant
Targeted HCP quantification using stable isotope-labelled reference standards for accurate, reproducible results.
-
HCP quantification
-
Quantitation of selected HCPs via targeted proteomics and QconCATs
-
Routine analysis of samples during process development
Targeted analysis, verification and absolute quantification of host contaminant proteins. Individual service as agreed with the customer.
Please download and complete our guidelines for sample submission (for one sample) or our sample submission sheet (for multiple samples)
Custom HCP Assay
Tailored assay development for novel host systems, critical HCPs, or custom regulatory requirements.
-
Clinical/manufacturing HCP assays
-
Development and validation of a custom HCP assay
-
GMP-transfer for routine testing
Our experienced professionals develop customized assays for each new project. The resulting workflows, tools and protocols will be used in-house for routine applications or can be transferred to the customer according to GMP guidelines.
Comprehensive protein quality analysis service
1) Detection
-
High resolution LC-MS/MS
-
Detection of common and custom-specific HCPs
-
Validation of the contamination’s source

Workflow for HCP analysis using LC-MS/MS.
A sample containing HCP contaminations is digested with an appropriate protease. After LC separation, the peptides are detected using high resolution mass spectrometry.
2) Routine method setup
-
Targeted LC-MS/MS with low turnover time per sample
-
Accurate and precise quantification of target HCPs
3) Validation according to GMP Guidelines
-
Determination of accuracy, precision, matrix effects, linearity and more
-
Applicable to CSLI and/or FDA guidelines

In discovery proteomics, peptide features are detected in an unbiased way and selected for fragmentation. The resulting MS2 spectra are used to identify peptides. Quantification can be performed on MS1 level, i.e. on unfragmented peptides. In targeted proteomics, preselected masses are fragmented several times. Quantification is performed on MS2 level, i.e. on peptide fragments.
High sensitivity
Ultra-sensitive and unbiased protein detection with high-end instruments
Individual service
Receive customized HCP analysis services with clear timelines, milestones, deliverables and detailed reporting.
Support
Our experienced team provides consulting and support at every stage of the project. From early R&D up to routine testing under GMP guidelines.
Fast method setup
HCP detection in difficult matrices without requiring lengthy antibody production or ELISA development.
Contact us now:
Whether you are looking for alternatives to ELISA, develop a custom HCP assay, or implement LC-MS/MS in your QC process, our experts are here to support you.
Contact us to discuss your needs or request a quote. We will provide a tailored proposal, including timelines, deliverables, and support options.
E-Mail: info[at]polyquant.com
Phone: +49 (0)9405 96999 10
Fax: +49 (0)9405 96999 28
Available Products
Ready-made standards for fast implementation of LC-MS/MS-based HCP analysis
We provide off-the-shelf QconCAT reference standards for commonly used expression systems and custom solutions for individual host expression systems.
Currently available products from our expanding portfolio:


